Post your configuration,h file for Marlin the version number.
I will be look see what I can do.

My end-stop / home config.

Code:
// Mechanical endstop with COM to ground and NC to Signal uses "false" here (most common setup).
#define X_MIN_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Y_MIN_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Z_MIN_ENDSTOP_INVERTING false // set to true to invert the logic of the endstop.
#define X_MAX_ENDSTOP_INVERTING false // set to true to invert the logic of the endstop.
#define Y_MAX_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Z_MAX_ENDSTOP_INVERTING true // set to true to invert the logic of the endstop.
#define Z_MIN_PROBE_ENDSTOP_INVERTING false // set to same logic as "Z_MIN_ENDSTOP_INVERTING.

// Invert the stepper direction. Change (or reverse the motor connector) if an axis goes the wrong way.
#define INVERT_X_DIR false
#define INVERT_Y_DIR false
#define INVERT_Z_DIR true

// Direction of endstops when homing; 1=MAX, -1=MIN
// :[-1,1]
#define X_HOME_DIR -1
#define Y_HOME_DIR -1
#define Z_HOME_DIR -1
1st part of code direction location of the end-stop.
2nd part of code direction to the end-stop / Home boundaries.