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When I manually tell it to move 50mm, it does actually move 50mm.

Does this help? Again this is supposed to be a .5mm thin wall calibration box. The layers move all along the x axis in random ways.

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It just seems to get lost during the print.
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Thanks for the input but it doesn't seem to be temperature related. The actual movements the printer is taking are wrong. I'm using Slic3r and pronterface. Before the print I checked the layers in...

I built a prusa i3 from NWreprap a few weeks ago. I got it up and running and calibrated with PLA. After not using it for a few days I tried to switch over to ABS and all of my prints now look like...